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1. Introduction
1. Introduction to Medical Microbiology Historical Perspective Viruses Bacteria Fungi Parasites Concept of Infectious Disease Role of Diagnostic Microbiology Laboratory
2. Human Microbiome in Health and Disease Human Microbiome Project Core Microbiome Evolution of the Microbiome and Normal Flora Role of the Microbiome in Health and Disease Diagnostics and Therapeutics Perspective
3. Infection Control and Preventio Infection Prevention and Control in the Hospital Surveillance Investigating Hospital Acquired Infections Infection Prevention Program Personal Protective Equipment Antimicrobial/Diagnostic Stewardship Disinfection, Sterilization Infection Prevention and Control in the Community Emerging Infectious Diseases Personal Hygiene Vaccines Therapeutics Section
2. General Principles of Laboratory Diagnosis
4. Traditional Diagnostic Methods Microscopy Culture Identification and Antimicrobial Susceptibility Testing Serology Antibody detection Antigen detection
5. Molecular and Proteomic Method Microbial Detection Microbial Identification Epidemiologic Typing Section
3. Basic Concepts in the Immune Response
6. Elements of Host Protective Responses Overview of the immune system as a system Soluble Activators and Stimulators of Innate and Immune Functions Cells of the Immune Response
8. Innate Host Responses Barriers to Infection Soluble Components of Innate Responses Cellular Components of Innate Responses Activation of Innate Cellular Responses Normal Flora–Associated Responses Inflammation Bridge to Antigen-Specific Immune Responses
9. Antigen-Specific Immune Responses Immunogens, Antigens, and Epitopes T Cells Cell-Surface Receptors of T Cells Development of T Cells Initiation of T-Cell Responses Activation of CD4 T Cells and Their Response to Antigen CD8 T Cells INNATE T Cells B Cells and Humoral Immunity B cells Immunoglobulin Types and Structures Immunogenetics Antibody Response
10. Immune Responses to Infectious Agents Antibacterial Responses Antiviral Responses Specific Immune Responses to Fungi Specific Immune Responses to Parasites Other Immune Responses Immunopathogenesis Autoimmune Responses Immunodeficiency11. Antimicrobial Vaccines Types of Immunizations Immunization Programs Section
4. Bacteriology
12. Bacterial Classification, Structure, and Replication Differences between Eukaryotes and Prokaryotes Bacterial Classification Bacterial Structure Bacterial metabolism Bacterial Genetics
13. Bacterial Metabolism and Genetics Bacterial Metabolism Human Bacterial Metabolism Bacterial Genes and Expression Bacterial Genetics
14. Pathogenesis of Bacterial Diseases Entry into the Human Body Colonization, Adhesion, and Invasion Pathogenic Actions of Bacteria Immunopathogenesis Mechanisms for Escaping Host Defenses Summary
15. Role of Bacteria in Disease
16. Laboratory Diagnosis of Bacterial Diseases
17. Antibacterial Agents Inhibition of Cell Wall Synthesis Inhibition of Protein Synthesis Inhibition of Nucleic Acid Synthesis Other Antibiotics
18. Staphylococcus and Related Gram-Positive Cocci Physiology and Structure Pathogenesis and Immunity Epidemiology Clinical Diseases Staphylococcus aureus Staphylococcus, other species Laboratory Diagnosis Treatment, Prevention, and Control
19. Streptococcus and Enterococcus General Properties Streptococcus pyogenes Streptococcus agalactiae Other ß-Hemolytic Streptococci Viridans Streptococci Streptococcus pneumoniae Enterococcus
20. Bacillus Bacillus anthracis Bacillus cereus
21. Listeria and Related Gram-Positive Bacteria Listeria monocytogenes Erysipelothrix rhusiopathiae Corynebacterium diphtheriae
22. Mycobacterium and Related Acid-Fast Bacteria Physiology and Structure of Mycobacteria Mycobacterium Tuberculosis Other Slow-Growing Mycobacteria Rapidly Growing Mycobacteria Nocardia Other Weakly Acid-Fast Bacteria
23. Neisseria and Related Genera Neisseria gonorrhoeae and Neisseria meningitidis Other Neisseria Species
24. Haemophilus and Related Bacteria Haemophilus
25. Enterobacteriales General Properties Escherichia coli Salmonella Shigella Yersinia Other Enterobacteriales Other General Properties
26. Vibrio and Related Bacteria Vibrio Aeromonas
27. Pseudomonas and Related Bacteria Pseudomonas Burkholderia Stenotrophomonas maltophilia Acinetobacter Moraxella
28. Campylobacter and Helicobacter Campylobacter Helicobacter
29. Miscellaneous Gram-Negative Rods Bartonella Bordetella Other Bordetella Species Brucella Cardiobacterium Francisella Legionella Streptobacillus
30. Clostridium Clostridium difficile Clostridium perfringens Clostridium tetani Clostridium botulinum Other Clostridial Species
31. Non–Spore-Forming Anaerobic Bacteria Anaerobic Gram-Positive Cocci Anaerobic Gram-Positive Rods Anaerobic Gram-Negative Cocci Anaerobic Gram-Negative Rods
32. Treponema, Borrelia, and Leptospira Treponema Borrelia Leptospira
33. Mycoplasma Physiology and Structure Pathogenesis and Immunity Epidemiology Clinical Diseases Laboratory Diagnosis Treatment, Prevention, and Control
34. Rickettsia, Ehrlichia, and Related Bacteria Rickettsiaceae Anaplasmataceae Coxiellaceae
35. Chlamydia Physiology and Structure Chlamydia trachomatis Chlamydia pneumoniae Chlamydia psittaci Section
5. Virology
36. Viral Classification, Structure, and Replication Classification Virion Structure Viral Replication Viral Genetics Viral Vectors for Therapy
37. Pathogenesis of Viral Diseases Basic Steps in Viral Disease Infection of the Target Tissue Viral Pathogenesis Viral Disease Epidemiology Control of Viral Spread38. Role of Viruses in Disease Viral Diseases Chronic and Potentially Oncogenic Infections Infections in Immunocompromised Patients Congenital, Neonatal, and Perinatal Infections
39. Laboratory Diagnosis of Viral Diseases Specimen Collection Cytology Electron Microscopy Viral Isolation and Growth Detection of Viral Genetic Material Detection of Viral Proteins Viral Serology
40. Antiviral Agents and Infection Control Targets for Antiviral Drugs Nucleoside Analogs Nonnucleoside Polymerase Inhibitors Protease Inhibitors Antiinfluenza Drugs Immunomodulators Infection Control
41. Papillomaviruses and Polyomaviruses Human Papillomaviruses Polyomaviridae
42. Adenoviruses Structure and Replication Pathogenesis and Immunity Epidemiology Clinical Syndromes Laboratory Diagnosis Treatment, Prevention, and Control Therapeutic Adenoviruses
43. Human Herpesviruses Structure of Herpesviruses Herpesvirus Replication Herpes Simplex Virus Varicella-Zoster Virus Epstein-Barr Virus Cytomegalovirus Human Herpesviruses 6 and 7 Other Human Herpesviruses
44. Poxviruses Structure and Replication Pathogenesis and Immunity Epidemiology Clinical Syndromes
45. Parvoviruses Structure and Replication Pathogenesis and Immunity Epidemiology Clinical Syndromes Laboratory Diagnosis Treatment, Prevention, and Control
46. Picornaviruses Structure Replication Enteroviruses Rhinoviruses
47. Coronaviruses and Noroviruses Coronaviruses Noroviruses
48. Paramyxoviruses Structure and Replication Measles Virus Parainfluenza Viruses Mumps Virus Respiratory Syncytial Virus Human Metapneumovirus Nipah and Hendra Viruses
49. Orthomyxoviruses Structure and Replication Pathogenesis and Immunity Epidemiology Clinical Syndromes Laboratory Diagnosis Treatment, Prevention, and Control
50. Rhabdoviruses, Filoviruses, and Bornaviruses Rhabdoviruses Filoviruses Borna Disease Virus
51. Reoviruses Structure Replication Rotaviruses Orthoreoviruses (Mammalian Reoviruses) Coltiviruses and Orbiviruses
52. Togaviruses and Flaviviruses Alphaviruses and Flaviviruses Rubella Virus
53. Bunyaviridae and Arenaviridae Bunyaviridae Arenaviruses
54. Retroviruses Classification Structure Replication Human Immunodeficiency Virus Human T-Cell Lymphotropic Virus and Other Oncogenic Retroviruses Endogenous Retroviruses
55. Hepatitis Viruses Hepatitis A Virus Hepatitis B Virus Hepatitis C and G Viruses Hepatitis G Virus Hepatitis D Virus Hepatitis E Virus
56. Prion Diseases Structure and Physiology Pathogenesis Epidemiology Clinical Syndromes Laboratory Diagnosis Treatment, Prevention, and Control Section
6. Mycology
57. Fungal Classification, Structure, and Replication The Importance of Fungi Fungal Taxonomy, Structure, and Replication Ascomycota (Ascomycetes) Basidiomycota (Basidiomycetes) Glomerulomycota (Mucormycetes, formerly Zygomycetes) Microspora (Microsporidia) Classification of Human Mycoses Summary
58. Pathogenesis of Fungal Disease Primary Fungal Pathogens Opportunistic Pathogens
59. Role of Fungi in Disease
60. Laboratory Diagnosis of Fungal Disease Clinical Recognition of Fungal Infections Conventional Laboratory Diagnosis Immunologic, Molecular, and Biochemical Markers for Direct Detection of Invasive Fungal Infections
61. Antifungal Agents Systemically Active Antifungal Agents Topical Antifungal Agents Investigational Antifungal Agents Combinations of Antifungal Agents in the Treatment of Mycoses Mechanisms of Resistance to Antifungal Agents
62. Superficial and Cutaneous Mycoses Superficial Mycoses Cutaneous Mycoses
63. Subcutaneous Mycoses Lymphocutaneous Sporotrichosis Chromoblastomycosis Eumycotic Mycetoma Subcutaneous Entomophthoromycosis Subcutaneous Phaeohyphomycosis
64. Systemic Mycoses Caused by Dimorphic Fungi Blastomycosis Coccidioidomycosis Emergomycosis and Adiaspiromycosis Histoplasmosis Paracoccidioidomycosis Talaromycosis (Penicilliosis) marneffei
65. Opportunistic Mycoses Candidiasis Opportunistic Mycoses Caused by Cryptococcus Neoformans and Other Noncandidal Yeastlike Fungi Microsporidia Aspergillosis Mucormycosis Mycoses Caused by Other Hyaline Molds Phaeohyphomycosis Pneumocystosis
66. Fungal and Fungal-Like Infections of Unusual or Uncertain Etiology Adiaspiromycosis Chlorellosis Lacaziosis (Lobomycosis) Protothecosis Pythiosis Insidiosi Lagenidiosis Rhinosporidiosis Section
7. Parasitology
67. Parasitic Classification, Structure, and Replication Importance of Parasites Classification and Structure Physiology and Replication Summary
68. Pathogenesis of Parasitic Diseases Exposure and Entry Adherence and Replication Cell and Tissue Damage Disruption, Evasion, and Inactivation of Host Defenses
69. Role of Parasites in Disease
70. Laboratory Diagnosis of Parasitic Disease Parasite Life Cycle as an Aid in Diagnosis General Diagnostic Considerations Parasitic Infections of the Intestinal and Urogenital Tracts Parasitic Infections of Blood and Tissue Alternatives to Microscopy
71. Antiparasitic Agents Targets for Antiparasite Drug Action Drug Resistance Antiparasitic Agents
72. Intestinal and Urogenital Protozoa Amebae (Amoebozoa) Ciliates (Metamonada [Formerly Flagellates] and Ciliophora) Sporozoa (Apicomplexa)
73. Blood and Tissue Protozoa Plasmodium Species Babesia Species Toxoplasma gondii Sarcocystis lindemanni Free-Living Amebae Leishmania Trypanosomes
74. Nematodes Enterobius vermicularis Ascaris lumbricoides Toxocara and Baylisascaris Trichuris trichiura Hookworms Strongyloides stercoralis Trichinella spiralis Wuchereria bancrofti and Brugia malayi Loa loa Mansonella Species Onchocerca volvulus Dirofilaria immitis Dracunculus medinensis
75. Trematodes Fasciolopsis buski Fasciola hepatica Clonorchis sinensis Paragonimus westermani Schistosomes
76. Cestodes Taenia solium Cysticercosis Taenia saginata Diphyllobothrium latum Sparganosis Echinococcus granulosus Echinococcus multilocularis Hymenolepis nana Hymenolepis diminuta Dipylidium caninum
77. Arthropods Myriapoda Crustacea Pentastomida Chelicerata (Arachnida) Hexapoda (Insecta) Section
8. Infectious Diseases by Organ System
78. Sepsis and Cardiovascular Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
79. Ear, Nose, and Throat Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
80. Lower Respiratory Tract Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
81. Ocular and Central Nervous System Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
82. Genitourinary Tract Infections Urinary tract infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table Sexually transmitted genital infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
83. Gastrointestinal Tract Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
84. Intraabdominal Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table
85. Musculoskeletal, Skin, and Soft Tissue Infections Vignette Specific specimen sites and the collection/transport of the specimens summary table most likely pathogens summary table APPENDIX Classic References to Know (ASM manual, CDC, Trop Dis, etc) |
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